Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| TGCT | rs11059926 | chr12:129294244 | A/T | 1.39E-5 | 134 | 41.33 | 44.28 | 29.53 | KM Plot |
| TGCT | rs11059927 | chr12:129294333 | T/C | 1.39E-5 | 134 | 41.33 | 44.28 | 29.53 | KM Plot |
| TGCT | rs11059928 | chr12:129296103 | A/T | 1.39E-5 | 134 | 41.33 | 44.28 | 29.53 | KM Plot |
| TGCT | rs11059929 | chr12:129296893 | G/A | 1.09E-13 | 134 | 41.33 | 42.27 | 17.1 | KM Plot |
| TGCT | rs11059930 | chr12:129297860 | T/C | 1.39E-5 | 134 | 41.33 | 44.28 | 29.53 | KM Plot |
| TGCT | rs11059933 | chr12:129303593 | T/C | 1.39E-5 | 134 | 41.33 | 44.28 | 29.53 | KM Plot |
| TGCT | rs11060817 | chr12:130787732 | C/T | 9.11E-5 | 134 | 76.3 | 37.3 | 42.18 | KM Plot |
| TGCT | rs11113071 | chr12:107044281 | T/C | 3.53E-8 | 132 | 48.87 | 45.1 | 27.93 | KM Plot |
| TGCT | rs11113079 | chr12:107063617 | G/T | 3.11E-5 | 130 | 46.77 | 41.65 | 37.1 | KM Plot |
| TGCT | rs11113083 | chr12:107073316 | C/A | 5.07E-5 | 134 | 46.77 | 45.1 | 28.67 | KM Plot |
| TGCT | rs11113084 | chr12:107079994 | A/G | 5.07E-5 | 134 | 46.77 | 45.1 | 28.67 | KM Plot |
| TGCT | rs11113103 | chr12:107146241 | C/A | 3.98E-12 | 134 | 41.97 | 49.93 | 24.27 | KM Plot |
| TGCT | rs111258239 | chr10:27585375 | G/A | 0 | 127 | 42.18 | 45.83 | 18.85 | KM Plot |
| TGCT | rs111300525 | chr12:98721587 | G/A | 1.08E-5 | 133 | 39.38 | 77.17 | 41.28 | KM Plot |
| TGCT | rs111310691 | chr2:29501863 | C/G | 0 | 134 | 42.27 | 25.02 | 0.57 | KM Plot |